Publications

From the Johnson group:

Yan Q, Liu M, Kidarsa T, Johnson CP, Loper JE. (2021).

Two Pathway-Specific Transcriptional Regulators, PltR and PltZ, Coordinate Autoinduction of Pyoluteorin in Pseudomonas protegens Pf-5.

Microorganisms. Jul 13;9(7):1489. doi: 10.3390/microorganisms9071489. PMID: 34361923; PMCID: PMC8305169.
From the Barbar group:

Barbar E, Estelle A. (2021).

A tail goes viral by forming an anchor and a tether.

Structure. Aug 5;29(8):783-786. doi: 10.1016/j.str.2021.07.004. PMID: 34358464.
From the Barbar group:

White KA, McEntire KD, Buan NR, Robinson L, Barbar E. (2021).

Charting a New Frontier Integrating Mathematical Modeling in Complex Biological Systems from Molecules to Ecosystems.

Integr Comp Biol. Jul 20:icab165. doi: 10.1093/icb/icab165. Epub ahead of print. PMID: 34283225.
From the Barbar group:

Morgan JL, Yeager A, Estelle AB, Gsponer J, Barbar E. (2021).

Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners.

J Mol Biol. Jul 14;433(18):167152. doi: 10.1016/j.jmb.2021.167152. Epub ahead of print. PMID: 34273400.
From the Freitag group:

Alouane T, Rimbert H, Bormann J, González-Montiel GA, Loesgen S, Schäfer W, Freitag M, Langin T, Bonhomme L. (2021).

Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Int J Mol Sci. Jun 10;22(12):6257. doi: 10.3390/ijms22126257. PMID: 34200775; PMCID: PMC8230406.
From the Gombart group:

Zhang Y, Bobe G, Miranda C.L, Lowry M.B, Hsu V.L, Lohr C.V, Wong C.P, Jump D.B, Robinson M.M, Sharpton T.J, Maier C.S, Stevens J.F, Gombart A.F. (2021)

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Elife Jun 15;10:e66398. doi: 10.7554/eLife.66398. PMID: 34128467; PMCID: PMC8205491.
From the Mehl group:

Galles G.D, Infield D.T, Mehl R.A, Ahern C.A. (2021)

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

Methods Enzymol 654:3-18. doi: 10.1016/bs.mie.2021.03.009. Epub Apr 9. PMID: 34120719
From the Beckman group:

Beckman J.S, Voinov V.G, Hare M, Sturgeon D, Vasil'ev Y, Oppenheimer D, Shaw J.B, Wu S, Glaskin R, Klein C, Schwarzer C, Stafford G. (2021)

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

J Am Soc Mass Spectrom. Apr 29. doi: 10.1021/jasms.0c00482. Epub ahead of print. PMID: 33914527.
From the Beckman group:

Shen X, Xu T, Hakkila B, Hare M, Wang Q, Wang Q, Beckman J.S, Sun L. (2021)

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

J Am Soc Mass Spectrom. Mar 22. doi: 10.1021/jasms.0c00484. Epub ahead of print. PMID: 33749270.
From the Johnson group:

Manchanda A, Bonventre J.A, Bugel S.M, Chatterjee P, Tanguay R, Johnson C.P. (2021)

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Mol Biol Cell. May 12 doi: 10.1091/mbc.E20-10-0657. Online ahead of print.
From the Mehl group:

Chaparro Sosa A.F, Bednar R.M, Mehl R.A, Schwartz D.K, Kaar J.L. (2021)

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

J Am Chem Soc. May 12;143(18):7154-7163. doi: 10.1021/jacs.1c02375. Epub 2021 Apr 29. PMID: 33914511.
From the Barbar & Cooley group:

Forsythe, H. M., Galvan, J. R., Yu, Z., Pinckney, S., Reardon, P., Cooley, R. B., Zhu, P., Rolland, A. D., Prell, J. S., & Barbar, E. (2021).

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Biophysical Journal Mar 29:S0006-3495(21)00253-8. doi: 10.1016/j.bpj.2021.03.023. Online ahead of print.
From the Freitag group:

Möller M, Habig M, Lorrain C, Feurtey A, Haueisen J, Fagundes W.C, Alizadeh A, Freitag M, and Stukenbrock E.H. (2021).

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

PLoS Genet. Mar 22;17(3):e1009448. Doi: 10.1371/journal.pgen.1009448. Online ahead of print.
From the Karplus group:

Peskin A.V, Meotti F.C, Kean K.M, Göbl C, Peixoto A.S, Pace P.E, Horne C.R, Heath S.G, Crowther J.M, Dobson R.C, Karplus P.A, and Winterbourn C.C. (2021).

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

J Biol Chem. Mar 2;100494. doi: 10.1016/j.jbc.2021.100494. Online ahead of print.
From the Hendrix group:

Eriksen R.L, Padgitt-Cobb L.K, Townsend M.S, and Henning J.A. (2021)

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Sci Rep Mar 4;11(1):5138. Doi: 10.1038/s41598-021-84691-y.

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Biochemistry and Biophysics

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Two Pathway-Specific Transcriptional Regulators, PltR and PltZ, Coordinate Autoinduction of Pyoluteorin in Pseudomonas protegens Pf-5.

A tail goes viral by forming an anchor and a tether.

Charting a New Frontier Integrating Mathematical Modeling in Complex Biological Systems from Molecules to Ecosystems.

Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners.

Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

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