Publications

From the Hendrix group:

Padgitt-Cobb L.K, Kingan S.B, Wells J, Elser J, Kronmiller B, Moore D, Concepcion G, Peluso P, Rank D, Jaiswal P, Henning J, and Hendrix D.A. (2021)

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Plant Genome Feb 18;e20072. https://doi.org/10.1002/tpg2.20072
From the Barbar group:

Eastwood E.L, Jara K.A, Bornelöv S, Munafò M, Frantzis V, Kneuss E, Barbar E.J, Czech B, and Hannon G.J. (2021).

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

Elife Feb 4;10e65557. Doi: 10.7554/eLife.65557
From the Qiu group:

Xian Y, Xie, Y, Silva S.M, Karki C.B, Qiu W, and Li L. (2021)

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

Front Mol Biosci. Jan 11;7:627087. doi: 10.3389/fmolb.2020.627087. eCollection 2020.
From the Nyarko group:

Baker K, Kwok E, Reardon P, Rodriguez D.J, Rolland A.D, Wilson J.W, Prell J.S, and Nyarko A. (2020).

Yorkie-Warts complexes are an ensemble of interconverting conformers formed by multivalent interactions

J Mol Biol. Dec 28;166776. doi: 10.1016/j.jmb.2020.166776. Online ahead of print.
From the Johnson group:

Golbek T.W, Otto S.C, Roeters S.J, Weidner T, Johnson C.P, and Baio J.E. (2020).

Direct Evidence That Mutations within Dysferlin’s C2A Domain Inhibit Lipid Clustering

J Phys Chem B. Dec 23. doi: 10.1021/acs.jpcb.0c07143. Online ahead of print.
From the n/a group:

Moriarty N.W, Liebschner D, Tronrud D.E, and Adams P.D. (2020).

Arginine off-kilter: guanidinium is not as planar as restraints denote

Acta Crystallogr D Struct Biol. Dec 1;76(Pt 12): 1159-1166. doi: 10.1107/S2059798320013534. Epub 2020 Nov 24.
From the Freitag group:

Freitag M, et al. (2020).

Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex.

Phytopathology Nov 17. doi: 10.1094/PHYTO-08-20-0330-LE. Online ahead of print.
From the Mehl group:

Yang B, Kwon K, Jana S, Kim S, Avila-Crump S, Tae G, Mehl R.A, and Kwon I. (2020).

Temporal Control of Efficient In Vivo Bioconjugation Using a Genetically Encoded Tetrazine-Mediated Inverse-Electron-Demand Diels-Alder Rection.

Bioconjug Chem. Oct 21;31(10):2456-2464. doi: 10.1021/acs.bioconjchem.0c00497. Epub 2020 Oct 9.
From the Gombart group:

Calder P.C, Carr A.C, Gombart A.F, and Eggersdorfer M. (2020).

Reply to "Overstated Claims of Efficacy and Safety. Comment On: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.

Nutrients Sep 3;12(9):E2696. Doi: 10.3390/nu12092696.
From the Hagen group:

Bobe G, Michels A.J, Zhang W, Purnell J.Q, Woffendin C, Pereira C, Vita J.A, Thomas N.O, Traber M.G, Frei B, and Hagen T.M. (2020).

A Randomized Controlled Trial of Long-Term (R)- α-Lipoic Acid Supplementation Promotes Weight Loss in Overweight or Obese Adults without Altering Baseline Elevated Plasma Triglyceride Concentrations.

J Nutr Sep 1;150(9):2336-2345. doi:10.1093/jn/nxaa203.
From the Freitag group:

Feurtey A, Lorrain C, Croll D, Eschenbrenner C, Freitag M, Habig M, Haueisen J, Mӧller M, Schotanus K, and Stukenbrock E.H. (2020).

Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria.

BMC Genomics Aug 26;21(1):588. doi: 10.1186/s12864-020-06871-w.
From the Gombart group:

Calder P.C, Carr A.C, Gombart A.F, and Eggersdorfer M. (2020).

Reply to "Comment on: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.

Nutrients Aug 3;12(8):E2326. doi: 10.3390/nu12082326.
From the Gombart group:

Fantacone M.L, Lowry M.B, Uesugi S.L, Michels A.J, Choi J, Leonard S.W, Gombart S.K, Gombart J.S, Bobe G, and Gombart A.F. (2020).

The Effect of a Multivitamin and Mineral Supplement on Immune Function in Healthy Older Adults: A Double-Blind, Randomized, Controlled Trial.

Nutrients Aug 14;12(8):E2447. doi: 10.3390/nu12082447.
From the Qiu group:

Swentowsky K.W, Gent J.I, Lowry E.G, Schubert V, Ran X, Tseng K, Harkess A.E, Qiu W, and Dawe R.K. (2020).

Distinct kinesin motors drive two types of maize neocentromeres.

Genes Dev. Aug 20. doi: 10.1101/gad.340679.120. Online ahead of print.
From the Barbar group:

Loening N.M, Saravanan S, Jespersen N.E, Jara K, and Barbar E. (2020).

Interplay of Disorder and Sequence Specificity in the Formation of Stable Dynein-Dynactin Complexes.

Biophys. J. Aug 5;S0006-3495(20)30587-7. doi: 10.1016/j.bpj.2020.07.023. Online ahead of print.

Biochemistry and Biophysics

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A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

Yorkie-Warts complexes are an ensemble of interconverting conformers formed by multivalent interactions

Direct Evidence That Mutations within Dysferlin’s C2A Domain Inhibit Lipid Clustering

Arginine off-kilter: guanidinium is not as planar as restraints denote

Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex.

Temporal Control of Efficient In Vivo Bioconjugation Using a Genetically Encoded Tetrazine-Mediated Inverse-Electron-Demand Diels-Alder Rection.

Reply to "Overstated Claims of Efficacy and Safety. Comment On: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.

A Randomized Controlled Trial of Long-Term (R)- α-Lipoic Acid Supplementation Promotes Weight Loss in Overweight or Obese Adults without Altering Baseline Elevated Plasma Triglyceride Concentrations.

Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria.

Reply to "Comment on: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.

The Effect of a Multivitamin and Mineral Supplement on Immune Function in Healthy Older Adults: A Double-Blind, Randomized, Controlled Trial.

Distinct kinesin motors drive two types of maize neocentromeres.

Interplay of Disorder and Sequence Specificity in the Formation of Stable Dynein-Dynactin Complexes.

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