Publications

From the Hagen group:

Visioli F, Ingram A, Beckman JS, Magnusson KR, Hagen TM.

Strategies to protect against age-related mitochondrial decay: Do natural products and their derivatives help?

Free Radic Biol Med. 2022 Jan;178:330-346. doi: 10.1016/j.freeradbiomed.2021.12.008. Epub 2021 Dec 8.PMID: 34890770
From the Hagen group:

Rodríguez E, Radke A, Hagen TM, Blier PU.

Supercomplex organization of the electron transfer system in marine bivalves, a model of extreme longevity.

J Gerontol A Biol Sci Med Sci. 2021 Dec 6:glab363. doi: 10.1093/gerona/glab363. Epub ahead of print. PMID: 34871395.
From the Gombart group:

Logan IE, Shulzhenko N, Sharpton TJ, Bobe G, Liu K, Nuss S, Jones ML, Miranda CL, Vasquez-Perez S, Pennington JM, Leonard SW, Choi J, Wu W, Gurung M, Kim JP, Lowry MB, Morgun A, Maier CS, Stevens JF, Gombart AF

Xanthohumol Requires the Intestinal Microbiota to Improve Glucose Metabolism in Diet-Induced Obese Mice.

Mol Nutr Food Res. 2021 Nov;65(21):e2100389. doi: 10.1002/mnfr.202100389. Epub 2021 Oct 12. PMID: 34496124; PMCID: PMC8571065.
From the Barbar group:

Rodriguez Galvan J, Donner B, Veseley CH, Reardon P, Forsythe HM, Howe J, Fujimura G, Barbar E.

Human Parainfluenza Virus 3 Phosphoprotein Is a Tetramer and Shares Structural and Interaction Features with Ebola Phosphoprotein VP35.

Biomolecules 2021 Oct 29; 11(11):1603. https://doi.org/10.3390/biom11111603
From the Cooley group:

Sluchanko NN, Tugaeva KV, Gushchin I, Remeeva A, Kovalev K, Cooley RB.

Crystal structure of human 14-3-3ζ complexed with the noncanonical phosphopeptide from proapoptotic BAD.

Biochem Biophys Res Commun. 2021 Oct 26;583:100-105. doi: 10.1016/j.bbrc.2021.10.053. Epub ahead of print. PMID: 34735870.
From the Mehl group:

Zagotta WN, Sim BS, Nhim AK, Raza MM, Evans EG, Venkatesh Y, Jones CM, Mehl RA, Petersson EJ, Gordon SE.

An improved fluorescent noncanonical amino acid for measuring conformational distributions using time-resolved transition metal ion FRET.

Elife. 2021 Oct 8;10:e70236. doi: 10.7554/eLife.70236. PMID: 34623258; PMCID: PMC8500717.
From the Mehl and Cooley group:

Bednar RM, Jana S, Kuppa S, Franklin R, Beckman J, Antony E, Cooley RB, Mehl RA.

Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells.

ACS Chem Biol. 2021 Sep 30. doi: 10.1021/acschembio.1c00649. Epub ahead of print. PMID: 34590824.
From the Freitag group:

Geiser DM . . . , Freitag M . . . , Zhang X

Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex.

Phytopathology. 2021 Sep 9:PHYTO08200330LE. doi: 10.1094/PHYTO-08-20-0330-LE. Epub ahead of print. PMID: 33200960.
From the Barbar group:

Morgan JL, Yeager A, Estelle AB, Gsponer J, Barbar E. (2021).

Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners.

J Mol Biol. Jul 14;433(18):167152. doi: 10.1016/j.jmb.2021.167152. Epub ahead of print. PMID: 34273400.
From the Barbar group:

Barbar E, Estelle A.

A tail goes viral by forming an anchor and a tether.

Structure. 2021 Aug 5;29(8):783-786. doi: 10.1016/j.str.2021.07.004. PMID: 34358464.
From the Beckman group:

Beckman J.S, Voinov V.G, Hare M, Sturgeon D, Vasil'ev Y, Oppenheimer D, Shaw J.B, Wu S, Glaskin R, Klein C, Schwarzer C, Stafford G. (2021)

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

J Am Soc Mass Spectrom. Apr 29. doi: 10.1021/jasms.0c00482. Epub ahead of print. PMID: 33914527.
From the Barbar group:

White KA, McEntire KD, Buan NR, Robinson L, Barbar E. (2021).

Charting a New Frontier Integrating Mathematical Modeling in Complex Biological Systems from Molecules to Ecosystems.

Integr Comp Biol. Jul 20:icab165. doi: 10.1093/icb/icab165. Epub ahead of print. PMID: 34283225.
From the Johnson group:

Yan Q, Liu M, Kidarsa T, Johnson CP, Loper JE. (2021).

Two Pathway-Specific Transcriptional Regulators, PltR and PltZ, Coordinate Autoinduction of Pyoluteorin in Pseudomonas protegens Pf-5.

Microorganisms. Jul 13;9(7):1489. doi: 10.3390/microorganisms9071489. PMID: 34361923; PMCID: PMC8305169.
From the Reardon group:

Keller RMoon, Beaver LM, Reardon PN, Prater MC, Truong L, Robinson MM, Tanguay RL, Stevens JFred, Hord NG.

Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish skeletal muscle.

J Appl Physiol. (1985) 2021 Jul 1;131(1):142-157. doi: 10.1152/japplphysiol.00185.2021. Epub 2021 May 27. PMID: 34043471; PMCID: PMC8325611.
From the Barbar group:

Forsythe HM, Barbar E.

The role of dancing duplexes in biology and disease.

Prog Mol Biol Transl Sci. 2021;183:249-270. doi: 10.1016/bs.pmbts.2021.06.004. Epub 2021 Jun 30. PMID: 34656330.

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Biochemistry and Biophysics

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Strategies to protect against age-related mitochondrial decay: Do natural products and their derivatives help?

Supercomplex organization of the electron transfer system in marine bivalves, a model of extreme longevity.

Xanthohumol Requires the Intestinal Microbiota to Improve Glucose Metabolism in Diet-Induced Obese Mice.

Human Parainfluenza Virus 3 Phosphoprotein Is a Tetramer and Shares Structural and Interaction Features with Ebola Phosphoprotein VP35.

Crystal structure of human 14-3-3ζ complexed with the noncanonical phosphopeptide from proapoptotic BAD.

An improved fluorescent noncanonical amino acid for measuring conformational distributions using time-resolved transition metal ion FRET.

Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells.

Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex.

Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners.

A tail goes viral by forming an anchor and a tether.

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

Charting a New Frontier Integrating Mathematical Modeling in Complex Biological Systems from Molecules to Ecosystems.

Two Pathway-Specific Transcriptional Regulators, PltR and PltZ, Coordinate Autoinduction of Pyoluteorin in Pseudomonas protegens Pf-5.

Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish skeletal muscle.

The role of dancing duplexes in biology and disease.

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