Publications

From the Hendrix group:

Sall K, Dekkers BJW, Nonogaki M, Katsuragawa Y, Koyari R, Hendrix D, Willems LAJ, Bentsink L, Nonogaki H. (2019)

DELAY OF GERMINATION1-LIKE4 acts as an inducer of seed reserve accumulation.

Plant J. Jul 29. doi: 10.1111/tpj.14485. [Epub ahead of print]
From the Barbar & Hendrix group:

Jespersen N, Estelle A, Waugh N, Davey NE, Blikstad C, Ammon YC, Akhmanova A, Ivarsson Y, Hendrix DA, Barbar E. (2019)

Systematic identification of recognition motifs for the hub protein LC8.

Life Sci Alliance. Jul 2;2(4). pii: e201900366. doi: 10.26508/lsa.201900366. Print 2019 Aug.
From the Franco group:

Pestoni JC, Klingeman Plati S, Valdivia Camacho OD, Fuse MA, Onatunde M, Sparrow NA, Karajannis MA, Fernández-Valle C, Franco MC. (2019)

Peroxynitrite supports a metabolic reprogramming in merlin-deficient Schwann cells and promotes cell survival.

J Biol Chem. Jul 26;294(30):11354-11368. doi: 10.1074/jbc.RA118.007152. Epub 2019 Jun 6.
From the Mehl group:

Van Fossen EM, Bednar RM, Mehl RA. (2019)

Engineering Spatial Orthogonality into Protein Translation.

Biochemistry. Jul 25. doi: 10.1021/acs.biochem.9b00569. [Epub ahead of print]
From the Mehl & Cooley group:

Zhu P, Gafken PR, Mehl RA, Cooley RB. (2019)

A Highly Versatile Expression System for the Production of Multiply Phosphorylated Proteins.

ACS Chem Biol. Jul 19;14(7):1564-1572. doi: 10.1021/acschembio.9b00307. Epub 2019 Jun 17.
From the Mehl group:

Randall LM, Dalla Rizza J, Parsonage D, Santos J, Mehl RA, Lowther WT, Poole LB, Denicola A. (2019)

Unraveling the effects of peroxiredoxin 2 nitration; role of C-terminal tyrosine 193.

Free Radic Biol Med. Jul 16;141:492-501. doi: 10.1016/j.freeradbiomed.2019.07.016. [Epub ahead of print]
From the Freitag group:

Adpressa DA, Connolly LR, Konkel ZM, Neuhaus GF, Chang XL, Pierce BR, Smith KM, Freitag M, Loesgen S. (2019)

A metabolomics-guided approach to discover Fusarium graminearum metabolites after removal of a repressive histone modification.

Fungal Genet Biol. Jul 22;132:103256. doi: 10.1016/j.fgb.2019.103256. [Epub ahead of print]
From the Johnson group:

Bonventre JA, Holman C, Manchanda A, Codding SJ, Chau T, Huegel J, Barton C, Tanguay R, Johnson CP. (2019)

Fer1l6 is essential for the development of vertebrate muscle tissue in zebrafish.

Mol Biol Cell. Feb 1;30(3):293-301. doi: 10.1091/mbc.E18-06-0401.
From the Hendrix group:

Hill ST, Kuintzle R, Teegarden A, Merrill E 3rd, Danaee P, Hendrix DA. (2018)

A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential.

Nucleic Acids Res. Jul 9. doi: 10.1093/nar/gky567. [Epub ahead of print]
From the Hendrix group:

Danaee P, Rouches M, Wiley M, Deng D, Huang L, Hendrix D. (2018)

bpRNA: large-scale automated annotation and analysis of RNA secondary structure.

Nucleic Acids Res. Jun 20;46(11):5381-5394. doi: 10.1093/nar/gky285.
From the Freitag group:

Thieme KG, Gerke J, Sasse C, Valerius O, Thieme S, Karimi R, Heinrich AK, Finkernagel F, Smith K, Bode HB, Freitag M, Ram AFJ, Braus GH. (2018)

Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism.

PLoS Genet. Jul 25;14(7):e1007511. doi: 10.1371/journal.pgen.1007511. [Epub ahead of print]
From the Freitag group:

Bormann J, Heinze C, Blum C, Mentges M, Brockmann A, Alder A, Landt SK, Josephson B, Indenbirken D, Spohn M, Plitzko B, Loesgen S, Freitag M, Schäfer W. (2018)

Expression of a structural protein of the mycovirus FgV-ch9 negatively affects the transcript level of a novel symptom alleviation factor and causes virus-infection like symptoms in Fusarium graminearum.

J Virol. Jun 13. pii: JVI.00326-18. doi: 10.1128/JVI.00326-18. [Epub ahead of print]
From the Qiu group:

Wang P, Tseng KF, Gao Y, Cianfrocco M, Guo L, Qiu W. (2018)

The Central Stalk Determines the Motility of Mitotic Kinesin-14 Homodimers.

Curr Biol. Jul 23;28(14):2302-2308.e3. doi: 10.1016/j.cub.2018.05.026. Epub 2018 Jul 12.
From the Qiu & Mehl group:

Popchock AR, Jana S, Mehl RA, Qiu W. (2018)

Engineering Heterodimeric Kinesins through Genetic Incorporation of Noncanonical Amino Acids.

ACS Chem Biol. Jun 12. doi: 10.1021/acschembio.8b00399. [Epub ahead of print]
From the Mehl group:

Carlsson AC, Scholfield MR, Rowe RK, Ford MC, Alexander AT, Mehl RA, Ho PS. (2018)

Increasing Enzyme Stability and Activity through Hydrogen Bond-Enhanced Halogen Bonds.

Biochemistry. Jul 17;57(28):4135-4147. doi: 10.1021/acs.biochem.8b00603. Epub 2018 Jul 3.

Biochemistry and Biophysics

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DELAY OF GERMINATION1-LIKE4 acts as an inducer of seed reserve accumulation.

Systematic identification of recognition motifs for the hub protein LC8.

Peroxynitrite supports a metabolic reprogramming in merlin-deficient Schwann cells and promotes cell survival.

Engineering Spatial Orthogonality into Protein Translation.

A Highly Versatile Expression System for the Production of Multiply Phosphorylated Proteins.

Unraveling the effects of peroxiredoxin 2 nitration; role of C-terminal tyrosine 193.

A metabolomics-guided approach to discover Fusarium graminearum metabolites after removal of a repressive histone modification.

Fer1l6 is essential for the development of vertebrate muscle tissue in zebrafish.

A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential.

bpRNA: large-scale automated annotation and analysis of RNA secondary structure.

Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism.

Expression of a structural protein of the mycovirus FgV-ch9 negatively affects the transcript level of a novel symptom alleviation factor and causes virus-infection like symptoms in Fusarium graminearum.

The Central Stalk Determines the Motility of Mitotic Kinesin-14 Homodimers.

Engineering Heterodimeric Kinesins through Genetic Incorporation of Noncanonical Amino Acids.

Increasing Enzyme Stability and Activity through Hydrogen Bond-Enhanced Halogen Bonds.

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