Publications

From the Freitag group:

Alouane T, Rimbert H, Bormann J, González-Montiel GA, Loesgen S, Schäfer W, Freitag M, Langin T, Bonhomme L. (2021).

Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Int J Mol Sci. Jun 10;22(12):6257. doi: 10.3390/ijms22126257. PMID: 34200775; PMCID: PMC8230406.
From the Gombart group:

Zhang Y, Bobe G, Miranda C.L, Lowry M.B, Hsu V.L, Lohr C.V, Wong C.P, Jump D.B, Robinson M.M, Sharpton T.J, Maier C.S, Stevens J.F, Gombart A.F. (2021)

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Elife Jun 15;10:e66398. doi: 10.7554/eLife.66398. PMID: 34128467; PMCID: PMC8205491.
From the Mehl group:

Galles G.D, Infield D.T, Mehl R.A, Ahern C.A. (2021)

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

Methods Enzymol 654:3-18. doi: 10.1016/bs.mie.2021.03.009. Epub Apr 9. PMID: 34120719
From the Beckman group:

Beckman J.S, Voinov V.G, Hare M, Sturgeon D, Vasil'ev Y, Oppenheimer D, Shaw J.B, Wu S, Glaskin R, Klein C, Schwarzer C, Stafford G. (2021)

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

J Am Soc Mass Spectrom. Apr 29. doi: 10.1021/jasms.0c00482. Epub ahead of print. PMID: 33914527.
From the Beckman group:

Shen X, Xu T, Hakkila B, Hare M, Wang Q, Wang Q, Beckman J.S, Sun L. (2021)

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

J Am Soc Mass Spectrom. Mar 22. doi: 10.1021/jasms.0c00484. Epub ahead of print. PMID: 33749270.
From the Johnson group:

Manchanda A, Bonventre J.A, Bugel S.M, Chatterjee P, Tanguay R, Johnson C.P. (2021)

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Mol Biol Cell. May 12 doi: 10.1091/mbc.E20-10-0657. Online ahead of print.
From the Mehl group:

Chaparro Sosa A.F, Bednar R.M, Mehl R.A, Schwartz D.K, Kaar J.L. (2021)

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

J Am Chem Soc. May 12;143(18):7154-7163. doi: 10.1021/jacs.1c02375. Epub 2021 Apr 29. PMID: 33914511.
From the Barbar & Cooley group:

Forsythe, H. M., Galvan, J. R., Yu, Z., Pinckney, S., Reardon, P., Cooley, R. B., Zhu, P., Rolland, A. D., Prell, J. S., & Barbar, E. (2021).

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Biophysical Journal Mar 29:S0006-3495(21)00253-8. doi: 10.1016/j.bpj.2021.03.023. Online ahead of print.
From the Freitag group:

Möller M, Habig M, Lorrain C, Feurtey A, Haueisen J, Fagundes W.C, Alizadeh A, Freitag M, and Stukenbrock E.H. (2021).

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

PLoS Genet. Mar 22;17(3):e1009448. Doi: 10.1371/journal.pgen.1009448. Online ahead of print.
From the Karplus group:

Peskin A.V, Meotti F.C, Kean K.M, Göbl C, Peixoto A.S, Pace P.E, Horne C.R, Heath S.G, Crowther J.M, Dobson R.C, Karplus P.A, and Winterbourn C.C. (2021).

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

J Biol Chem. Mar 2;100494. doi: 10.1016/j.jbc.2021.100494. Online ahead of print.
From the Hendrix group:

Eriksen R.L, Padgitt-Cobb L.K, Townsend M.S, and Henning J.A. (2021)

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Sci Rep Mar 4;11(1):5138. Doi: 10.1038/s41598-021-84691-y.
From the Barbar group:

Loening N.M, and Barbar E. (2021)

Structural characterization of the self-association domain of swallow

Protein Sci Feb 27. Doi: 10.1002/pro.4055. Online ahead of print.
From the Hendrix group:

Padgitt-Cobb L.K, Kingan S.B, Wells J, Elser J, Kronmiller B, Moore D, Concepcion G, Peluso P, Rank D, Jaiswal P, Henning J, and Hendrix D.A. (2021)

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Plant Genome Feb 18;e20072. https://doi.org/10.1002/tpg2.20072
From the Barbar group:

Eastwood E.L, Jara K.A, Bornelöv S, Munafò M, Frantzis V, Kneuss E, Barbar E.J, Czech B, and Hannon G.J. (2021).

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

Elife Feb 4;10e65557. Doi: 10.7554/eLife.65557
From the Qiu group:

Xian Y, Xie, Y, Silva S.M, Karki C.B, Qiu W, and Li L. (2021)

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

Front Mol Biosci. Jan 11;7:627087. doi: 10.3389/fmolb.2020.627087. eCollection 2020.

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Archived Publications

Biochemistry and Biophysics

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Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Structural characterization of the self-association domain of swallow

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

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