Publications

From the Barbar & Cooley group:

Forsythe, H. M., Galvan, J. R., Yu, Z., Pinckney, S., Reardon, P., Cooley, R. B., Zhu, P., Rolland, A. D., Prell, J. S., & Barbar, E. (2021).

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Biophysical Journal Mar 29:S0006-3495(21)00253-8. doi: 10.1016/j.bpj.2021.03.023. Online ahead of print.
From the Freitag group:

Möller M, Habig M, Lorrain C, Feurtey A, Haueisen J, Fagundes W.C, Alizadeh A, Freitag M, and Stukenbrock E.H. (2021).

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

PLoS Genet. Mar 22;17(3):e1009448. Doi: 10.1371/journal.pgen.1009448. Online ahead of print.
From the Karplus group:

Peskin A.V, Meotti F.C, Kean K.M, Göbl C, Peixoto A.S, Pace P.E, Horne C.R, Heath S.G, Crowther J.M, Dobson R.C, Karplus P.A, and Winterbourn C.C. (2021).

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

J Biol Chem. Mar 2;100494. doi: 10.1016/j.jbc.2021.100494. Online ahead of print.
From the Hendrix group:

Eriksen R.L, Padgitt-Cobb L.K, Townsend M.S, and Henning J.A. (2021)

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Sci Rep Mar 4;11(1):5138. Doi: 10.1038/s41598-021-84691-y.
From the Barbar group:

Loening N.M, and Barbar E. (2021)

Structural characterization of the self-association domain of swallow

Protein Sci Feb 27. Doi: 10.1002/pro.4055. Online ahead of print.
From the Hendrix group:

Padgitt-Cobb L.K, Kingan S.B, Wells J, Elser J, Kronmiller B, Moore D, Concepcion G, Peluso P, Rank D, Jaiswal P, Henning J, and Hendrix D.A. (2021)

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Plant Genome Feb 18;e20072. https://doi.org/10.1002/tpg2.20072
From the Barbar group:

Eastwood E.L, Jara K.A, Bornelöv S, Munafò M, Frantzis V, Kneuss E, Barbar E.J, Czech B, and Hannon G.J. (2021).

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

Elife Feb 4;10e65557. Doi: 10.7554/eLife.65557
From the Qiu group:

Xian Y, Xie, Y, Silva S.M, Karki C.B, Qiu W, and Li L. (2021)

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

Front Mol Biosci. Jan 11;7:627087. doi: 10.3389/fmolb.2020.627087. eCollection 2020.
From the Nyarko group:

Baker K, Kwok E, Reardon P, Rodriguez D.J, Rolland A.D, Wilson J.W, Prell J.S, and Nyarko A. (2020).

Yorkie-Warts complexes are an ensemble of interconverting conformers formed by multivalent interactions

J Mol Biol. Dec 28;166776. doi: 10.1016/j.jmb.2020.166776. Online ahead of print.
From the Johnson group:

Golbek T.W, Otto S.C, Roeters S.J, Weidner T, Johnson C.P, and Baio J.E. (2020).

Direct Evidence That Mutations within Dysferlin’s C2A Domain Inhibit Lipid Clustering

J Phys Chem B. Dec 23. doi: 10.1021/acs.jpcb.0c07143. Online ahead of print.
From the n/a group:

Moriarty N.W, Liebschner D, Tronrud D.E, and Adams P.D. (2020).

Arginine off-kilter: guanidinium is not as planar as restraints denote

Acta Crystallogr D Struct Biol. Dec 1;76(Pt 12): 1159-1166. doi: 10.1107/S2059798320013534. Epub 2020 Nov 24.
From the Freitag group:

Freitag M, et al. (2020).

Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex.

Phytopathology Nov 17. doi: 10.1094/PHYTO-08-20-0330-LE. Online ahead of print.
From the Mehl group:

Yang B, Kwon K, Jana S, Kim S, Avila-Crump S, Tae G, Mehl R.A, and Kwon I. (2020).

Temporal Control of Efficient In Vivo Bioconjugation Using a Genetically Encoded Tetrazine-Mediated Inverse-Electron-Demand Diels-Alder Rection.

Bioconjug Chem. Oct 21;31(10):2456-2464. doi: 10.1021/acs.bioconjchem.0c00497. Epub 2020 Oct 9.
From the Gombart group:

Calder P.C, Carr A.C, Gombart A.F, and Eggersdorfer M. (2020).

Reply to "Overstated Claims of Efficacy and Safety. Comment On: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.

Nutrients Sep 3;12(9):E2696. Doi: 10.3390/nu12092696.
From the Hagen group:

Bobe G, Michels A.J, Zhang W, Purnell J.Q, Woffendin C, Pereira C, Vita J.A, Thomas N.O, Traber M.G, Frei B, and Hagen T.M. (2020).

A Randomized Controlled Trial of Long-Term (R)- α-Lipoic Acid Supplementation Promotes Weight Loss in Overweight or Obese Adults without Altering Baseline Elevated Plasma Triglyceride Concentrations.

J Nutr Sep 1;150(9):2336-2345. doi:10.1093/jn/nxaa203.

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Archived Publications

Biochemistry and Biophysics

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Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Structural characterization of the self-association domain of swallow

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

Yorkie-Warts complexes are an ensemble of interconverting conformers formed by multivalent interactions

Direct Evidence That Mutations within Dysferlin’s C2A Domain Inhibit Lipid Clustering

Arginine off-kilter: guanidinium is not as planar as restraints denote

Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex.

Temporal Control of Efficient In Vivo Bioconjugation Using a Genetically Encoded Tetrazine-Mediated Inverse-Electron-Demand Diels-Alder Rection.

Reply to "Overstated Claims of Efficacy and Safety. Comment On: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.

A Randomized Controlled Trial of Long-Term (R)- α-Lipoic Acid Supplementation Promotes Weight Loss in Overweight or Obese Adults without Altering Baseline Elevated Plasma Triglyceride Concentrations.

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