Publications

From the Hendrix group:

Kashyap A, Rhodes A, Kronmiller B, Berger J, Champagne A, Davis E.W, Finnegan M.V, Geniza M, Hendrix D.A, Löhr C.V, Petro V.M, Sharpton T.J, Wells J, Epps C.W, Jaiswal P, Tyler B.M, and Ramsey S.A. (2020)

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.

BMC Genomics Feb 12;21(1):153. doi: 10.1186/s12864-019-6432-4.
From the Beckman group:

Williams J.P, Morrison L.J, Brown J.M, Beckman J.S, Voinov V.G, and Lermyte F. (2020)

Top-Down Characterization of Denatured Proteins and Native Protein Complexes Using Electron Capture Dissociation Implemented within a Modified Ion Mobility-Mass Spectrometer.

Anal Chem Feb 11. doi: 10.1021/acs.analchem.9b04763. [Epub ahead of print]
From the Mehl group:

Jang H.S, Gu X, Cooley R.B, Porter J.J, Henson R.L, Willi T, DiDonato J.A, Hazen S.L, and Mehl R.A. (2020).

Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.

ACS Chemical Biology Feb 10. doi: 10.1021/acschembio.9b01026. [Epub ahead of print]
From the Gombart group:

Gombart A.F, Pierre A, Maggini S. (2020)

A Review of Micronutrients and the Immune System-Working in Harmony to Reduce the Risk of Infection.

Nutrients Jan 16;12(1). pii: E236. doi: 10.3390/nu12010236
From the Hendrix group:

Zhang Z, Garzotto M, Davis E.W 2nd, Mori M, Stoller W.A, Farris P.E, Wong C.P, Beaver L.M, Thomas G.V, Williams D.E, Dashwood R.H, Hendrix D.A, Ho E, and Shannon J. (2020)

Sulforaphane Bioavailability and Chemopreventive Activity in Men Presenting for Biopsy of the Prostate Gland: A Randomized Controlled Trial.

Nutr Cancer. 2020;72(1):74-87. doi: 10.1080/01635581.2019.1619783. Epub 2019 Jun 1.
From the Mehl group:

Porter J.J, Jang H.S, Haque M.M, Stuehr D.J, and Mehl R.A. (2019)

Tyrosine Nitration on Calmodulin Enhances calcium-dependent association and activation of Nitric Oxide Synthase.

J Biol Chem. Dec 30. pii: jbc.RA119.010999. doi: 10.1074/jbc.RA119.010999. [Epub ahead of print]
From the Barbar group:

Forsythe H.M, Vetter C.J, Jara K.A, Reardon P.N, David L.L, Barbar E.J, and Lampi K.J. (2019)

Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract-Associated Deamidations.

Biochemistry Oct 8;58(40):4112-4124. doi: 10.1021/acs.biochem.9b00593. Epub 2019 Sep 26.
From the Beckman group:

Trias E, Kovacs M, King P.H, Si Y, Kwon Y, Varela V, Ibarburu S, Moura I.C, Hermine O, Beckman J.S, and Barbeito L. (2019).

Schwann cells orchestrate peripheral nerve inflammation through the expression of CSF1, IL-34, and SCF in amyotrophic lateral sclerosis.

Glia. Dec 20: doi: 10.1002/glia.23768. [Epub ahead of print].
From the Beckman group:

Shaw J.B, Liu W, Vasil Ev. Y.V, Bracken C.C, Malhan N, Guthals A, Beckman J.S, and Voinov V.G. (2019).

Direct Determination of Antibody Chain Pairing by Top-down and Middle-down Mass Spectrometry Using Electron Capture Dissociation and Ultraviolet Photodissociation.

Anal Chem. Dec 12: doi: 10.1021/acs.analchem.9b03129. [Epub ahead of print]
From the Nyarko group:

Kwok E, Rodriguez D.J, Kremerskothen J, and Nyarko A. (2019)

Intrinsic disorder and amino acid specificity modulate binding of the WW2 domain in kidney and brain protein (KIBRA) to synaptopodin.

J Biol Chem. Nov 15: 294(46):17383-17394. doi: 10.1074/jbc.RA119.009589. Epub 2019 Oct 9.
From the Gombart group:

Lowry M.B, Guo C, Zhang Y, Fantacone M.L, Logan I.E, Campbell Y, Zhang W, Le M, Indra A.K, Ganguli-Indra G, Xie J, Gallo R.L, Koeffler H.P, and Gombart A.F. (2019)

A mouse model for vitamin D-induced human cathelicidin antimicrobial peptide gene expression.

J Steroid Biochem Mol Biol. Nov 26: 105552. doi: 10.1016/j.jsbmb.2019.105552. [Epub ahead of print]
From the Gombart group:

Zhang Y, Bobe G, Revel JS, Rodrigues R, Sharpton T.J, Fantacone M.L, Miranda C.L, Lowry M.B, Blakemore P.R, Morgun A, Shulzhenko N, Maier C.S, Stevens J.F, and Gombart A.F. (2019)

Improvements in Metabolic Syndrome by Xanthohumol Derivatives are Linked to Altered Gut Microbiota and Bile Acid Metabolism.

Mol Nutr Food Res. Nov 22: e1900789. doi: 10.1002/mnfr.201900789. [Epub ahead of print]
From the Mathews group:

Mathews CK. (2019)

Deoxyribonucleotide salvage falls short in whole animals.

J Biol Chem. Nov 1;294(44):15898-15899. doi: 10.1074/jbc.H119.011335.
From the Barbar group:

Jespersen NE, Leyrat C, Gérard FC, Bourhis JM, Blondel D, Jamin M, Barbar E. (2019)

The LC8-RavP ensemble structure evinces a role for LC8 in regulating Lyssavirus polymerase functionality.

J Mol Biol. Oct 18. pii: S0022-2836(19)30607-2. doi: 10.1016/j.jmb.2019.10.011. [Epub ahead of print]
From the Mehl group:

Tugaeva KV, Kalacheva DI, Cooley RB, Strelkov SV, Sluchanko NN. (2019)

Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

Sci Rep. Oct 18;9(1):15007. doi: 10.1038/s41598-019-50941-3.

Biochemistry and Biophysics

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Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.

Top-Down Characterization of Denatured Proteins and Native Protein Complexes Using Electron Capture Dissociation Implemented within a Modified Ion Mobility-Mass Spectrometer.

Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.

A Review of Micronutrients and the Immune System-Working in Harmony to Reduce the Risk of Infection.

Sulforaphane Bioavailability and Chemopreventive Activity in Men Presenting for Biopsy of the Prostate Gland: A Randomized Controlled Trial.

Tyrosine Nitration on Calmodulin Enhances calcium-dependent association and activation of Nitric Oxide Synthase.

Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract-Associated Deamidations.

Schwann cells orchestrate peripheral nerve inflammation through the expression of CSF1, IL-34, and SCF in amyotrophic lateral sclerosis.

Direct Determination of Antibody Chain Pairing by Top-down and Middle-down Mass Spectrometry Using Electron Capture Dissociation and Ultraviolet Photodissociation.

Intrinsic disorder and amino acid specificity modulate binding of the WW2 domain in kidney and brain protein (KIBRA) to synaptopodin.

A mouse model for vitamin D-induced human cathelicidin antimicrobial peptide gene expression.

Improvements in Metabolic Syndrome by Xanthohumol Derivatives are Linked to Altered Gut Microbiota and Bile Acid Metabolism.

Deoxyribonucleotide salvage falls short in whole animals.

The LC8-RavP ensemble structure evinces a role for LC8 in regulating Lyssavirus polymerase functionality.

Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

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