Publications

From the Freitag group:

Geiser DM . . . , Freitag M . . . , Zhang X

Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex.

Phytopathology. 2021 Sep 9:PHYTO08200330LE. doi: 10.1094/PHYTO-08-20-0330-LE. Epub ahead of print. PMID: 33200960.
From the Barbar group:

Morgan JL, Yeager A, Estelle AB, Gsponer J, Barbar E. (2021).

Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners.

J Mol Biol. Jul 14;433(18):167152. doi: 10.1016/j.jmb.2021.167152. Epub ahead of print. PMID: 34273400.
From the Barbar group:

Barbar E, Estelle A.

A tail goes viral by forming an anchor and a tether.

Structure. 2021 Aug 5;29(8):783-786. doi: 10.1016/j.str.2021.07.004. PMID: 34358464.
From the Beckman group:

Beckman J.S, Voinov V.G, Hare M, Sturgeon D, Vasil'ev Y, Oppenheimer D, Shaw J.B, Wu S, Glaskin R, Klein C, Schwarzer C, Stafford G. (2021)

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

J Am Soc Mass Spectrom. Apr 29. doi: 10.1021/jasms.0c00482. Epub ahead of print. PMID: 33914527.
From the Barbar group:

White KA, McEntire KD, Buan NR, Robinson L, Barbar E. (2021).

Charting a New Frontier Integrating Mathematical Modeling in Complex Biological Systems from Molecules to Ecosystems.

Integr Comp Biol. Jul 20:icab165. doi: 10.1093/icb/icab165. Epub ahead of print. PMID: 34283225.
From the Johnson group:

Yan Q, Liu M, Kidarsa T, Johnson CP, Loper JE. (2021).

Two Pathway-Specific Transcriptional Regulators, PltR and PltZ, Coordinate Autoinduction of Pyoluteorin in Pseudomonas protegens Pf-5.

Microorganisms. Jul 13;9(7):1489. doi: 10.3390/microorganisms9071489. PMID: 34361923; PMCID: PMC8305169.
From the Reardon group:

Keller RMoon, Beaver LM, Reardon PN, Prater MC, Truong L, Robinson MM, Tanguay RL, Stevens JFred, Hord NG.

Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish skeletal muscle.

J Appl Physiol. (1985) 2021 Jul 1;131(1):142-157. doi: 10.1152/japplphysiol.00185.2021. Epub 2021 May 27. PMID: 34043471; PMCID: PMC8325611.
From the Barbar group:

Forsythe HM, Barbar E.

The role of dancing duplexes in biology and disease.

Prog Mol Biol Transl Sci. 2021;183:249-270. doi: 10.1016/bs.pmbts.2021.06.004. Epub 2021 Jun 30. PMID: 34656330.
From the Gombart group:

Zhang Y, Bobe G, Miranda C.L, Lowry M.B, Hsu V.L, Lohr C.V, Wong C.P, Jump D.B, Robinson M.M, Sharpton T.J, Maier C.S, Stevens J.F, Gombart A.F. (2021)

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Elife Jun 15;10:e66398. doi: 10.7554/eLife.66398. PMID: 34128467; PMCID: PMC8205491.
From the Freitag group:

Alouane T, Rimbert H, Bormann J, González-Montiel GA, Loesgen S, Schäfer W, Freitag M, Langin T, Bonhomme L. (2021).

Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Int J Mol Sci. Jun 10;22(12):6257. doi: 10.3390/ijms22126257. PMID: 34200775; PMCID: PMC8230406.
From the Beckman group:

Shen X, Xu T, Hakkila B, Hare M, Wang Q, Wang Q, Beckman J.S, Sun L. (2021)

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

J Am Soc Mass Spectrom. Mar 22. doi: 10.1021/jasms.0c00484. Epub ahead of print. PMID: 33749270.
From the Mehl group:

Chaparro Sosa A.F, Bednar R.M, Mehl R.A, Schwartz D.K, Kaar J.L. (2021)

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

J Am Chem Soc. May 12;143(18):7154-7163. doi: 10.1021/jacs.1c02375. Epub 2021 Apr 29. PMID: 33914511.
From the Johnson group:

Manchanda A, Bonventre J.A, Bugel S.M, Chatterjee P, Tanguay R, Johnson C.P. (2021)

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Mol Biol Cell. May 12 doi: 10.1091/mbc.E20-10-0657. Online ahead of print.
From the Hagen group:

Rodríguez E, Hakkou M, Hagen TM, Lemieux H, Blier PU.J Gerontol A.

Divergences in the Control of Mitochondrial Respiration Are Associated With Life-Span Variation in Marine Bivalves.

Biol Sci Med Sci. 2021 Apr 30;76(5):796-804. doi: 10.1093/gerona/glaa301.PMID: 33257932
From the Mehl group:

Galles G.D, Infield D.T, Mehl R.A, Ahern C.A. (2021)

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

Methods Enzymol 654:3-18. doi: 10.1016/bs.mie.2021.03.009. Epub Apr 9. PMID: 34120719

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Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex.

Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners.

A tail goes viral by forming an anchor and a tether.

Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments.

Charting a New Frontier Integrating Mathematical Modeling in Complex Biological Systems from Molecules to Ecosystems.

Two Pathway-Specific Transcriptional Regulators, PltR and PltZ, Coordinate Autoinduction of Pyoluteorin in Pseudomonas protegens Pf-5.

Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish skeletal muscle.

The role of dancing duplexes in biology and disease.

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Divergences in the Control of Mitochondrial Respiration Are Associated With Life-Span Variation in Marine Bivalves.

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

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