Publications

From the Gombart group:

Zhang Y, Bobe G, Miranda C.L, Lowry M.B, Hsu V.L, Lohr C.V, Wong C.P, Jump D.B, Robinson M.M, Sharpton T.J, Maier C.S, Stevens J.F, Gombart A.F. (2021)

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Elife Jun 15;10:e66398. doi: 10.7554/eLife.66398. PMID: 34128467; PMCID: PMC8205491.
From the Freitag group:

Alouane T, Rimbert H, Bormann J, González-Montiel GA, Loesgen S, Schäfer W, Freitag M, Langin T, Bonhomme L. (2021).

Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Int J Mol Sci. Jun 10;22(12):6257. doi: 10.3390/ijms22126257. PMID: 34200775; PMCID: PMC8230406.
From the Beckman group:

Shen X, Xu T, Hakkila B, Hare M, Wang Q, Wang Q, Beckman J.S, Sun L. (2021)

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

J Am Soc Mass Spectrom. Mar 22. doi: 10.1021/jasms.0c00484. Epub ahead of print. PMID: 33749270.
From the Mehl group:

Chaparro Sosa A.F, Bednar R.M, Mehl R.A, Schwartz D.K, Kaar J.L. (2021)

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

J Am Chem Soc. May 12;143(18):7154-7163. doi: 10.1021/jacs.1c02375. Epub 2021 Apr 29. PMID: 33914511.
From the Johnson group:

Manchanda A, Bonventre J.A, Bugel S.M, Chatterjee P, Tanguay R, Johnson C.P. (2021)

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Mol Biol Cell. May 12 doi: 10.1091/mbc.E20-10-0657. Online ahead of print.
From the Hagen group:

Rodríguez E, Hakkou M, Hagen TM, Lemieux H, Blier PU.J Gerontol A.

Divergences in the Control of Mitochondrial Respiration Are Associated With Life-Span Variation in Marine Bivalves.

Biol Sci Med Sci. 2021 Apr 30;76(5):796-804. doi: 10.1093/gerona/glaa301.PMID: 33257932
From the Mehl group:

Galles G.D, Infield D.T, Mehl R.A, Ahern C.A. (2021)

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

Methods Enzymol 654:3-18. doi: 10.1016/bs.mie.2021.03.009. Epub Apr 9. PMID: 34120719
From the Perez group:

Díaz-Valdivia NI, Díaz J, Contreras P, Campos A, Rojas-Celis V, Burgos-Ravanal RA, Lobos-González L, Torres VA, Perez VI, Frei B, Leyton L, Quest AFG.

The non-receptor tyrosine phosphatase type 14 blocks caveolin-1-enhanced cancer cell metastasis.

Oncogene. 2020 Apr;39(18):3693-3709. doi: 10.1038/s41388-020-1242-3. Epub 2020 Mar 9. PMID: 32152405; PMCID: PMC7190567.
From the Barbar & Cooley group:

Forsythe, H. M., Galvan, J. R., Yu, Z., Pinckney, S., Reardon, P., Cooley, R. B., Zhu, P., Rolland, A. D., Prell, J. S., & Barbar, E. (2021).

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Biophysical Journal Mar 29:S0006-3495(21)00253-8. doi: 10.1016/j.bpj.2021.03.023. Online ahead of print.
From the Freitag group:

Möller M, Habig M, Lorrain C, Feurtey A, Haueisen J, Fagundes W.C, Alizadeh A, Freitag M, and Stukenbrock E.H. (2021).

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

PLoS Genet. Mar 22;17(3):e1009448. Doi: 10.1371/journal.pgen.1009448. Online ahead of print.
From the Hendrix group:

Eriksen R.L, Padgitt-Cobb L.K, Townsend M.S, and Henning J.A. (2021)

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Sci Rep Mar 4;11(1):5138. Doi: 10.1038/s41598-021-84691-y.
From the Karplus group:

Peskin A.V, Meotti F.C, Kean K.M, Göbl C, Peixoto A.S, Pace P.E, Horne C.R, Heath S.G, Crowther J.M, Dobson R.C, Karplus P.A, and Winterbourn C.C. (2021).

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

J Biol Chem. Mar 2;100494. doi: 10.1016/j.jbc.2021.100494. Online ahead of print.
From the Barbar group:

Loening N.M, and Barbar E. (2021)

Structural characterization of the self-association domain of swallow

Protein Sci Feb 27. Doi: 10.1002/pro.4055. Online ahead of print.
From the Nyarko group:

Baker K, Kwok E, Reardon P, Rodriguez DJ, Rolland AD, Wilson JW, Prell JS, Nyarko A.

Yorkie-Warts Complexes are an Ensemble of Interconverting Conformers Formed by Multivalent Interactions.

J Mol Biol. 2021 Feb 19;433(4):166776. doi: 10.1016/j.jmb.2020.166776. Epub 2020 Dec 28. PMID: 33383033.
From the Hendrix group:

Padgitt-Cobb L.K, Kingan S.B, Wells J, Elser J, Kronmiller B, Moore D, Concepcion G, Peluso P, Rank D, Jaiswal P, Henning J, and Hendrix D.A. (2021)

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Plant Genome Feb 18;e20072. https://doi.org/10.1002/tpg2.20072

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Archived Publications

Biochemistry and Biophysics

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Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ

Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures.

Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

Truncation of the otoferlin transmembrane domain alters the development of hair cells and reduces membrane docking.

Divergences in the Control of Mitochondrial Respiration Are Associated With Life-Span Variation in Marine Bivalves.

Selection and validation of orthogonal tRNA/synthetase pairs for the encoding of unnatural amino acids across kingdoms

The non-receptor tyrosine phosphatase type 14 blocks caveolin-1-enhanced cancer cell metastasis.

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

Structural characterization of the self-association domain of swallow

Yorkie-Warts Complexes are an Ensemble of Interconverting Conformers Formed by Multivalent Interactions.

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

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