Publications

From the Gombart group:

Gombart AF, Pierre A, Maggini S.

A Review of Micronutrients and the Immune System-Working in Harmony to Reduce the Risk of Infection.

Nutrients. 2020 Jan 16;12(1):236. doi: 10.3390/nu12010236. PMID: 31963293; PMCID: PMC7019735.
From the Beckman group:

Shaw JB, Liu W, Vasil Ev YV, Bracken CC, Malhan N, Guthals A, Beckman JS, Voinov VG.

Direct Determination of Antibody Chain Pairing by Top-down and Middle-down Mass Spectrometry Using Electron Capture Dissociation and Ultraviolet Photodissociation.

Anal Chem. 2020 Jan 7;92(1):766-773. doi: 10.1021/acs.analchem.9b03129. Epub 2019 Dec 12. PMID: 31769659; PMCID: PMC7819135.
From the Gombart group:

Zhang Y, Bobe G, Revel JS, Rodrigues RR, Sharpton TJ, Fantacone ML, Raslan K, Miranda CL, Lowry MB, Blakemore PR, Morgun A, Shulzhenko N, Maier CS, Stevens JF, Gombart AF.

Improvements in Metabolic Syndrome by Xanthohumol Derivatives Are Linked to Altered Gut Microbiota and Bile Acid Metabolism.

Mol Nutr Food Res. 2020 Jan;64(1):e1900789. doi: 10.1002/mnfr.201900789. PMID: 31755244; PMCID: PMC7029812.
From the Beckman group:

Trias E, Kovacs M, King PH, Si Y, Kwon Y, Varela V, Ibarburu S, Moura IC, Hermine O, Beckman JS, Barbeito L.

Schwann cells orchestrate peripheral nerve inflammation through the expression of CSF1, IL-34, and SCF in amyotrophic lateral sclerosis.

Glia. 2020 Jun;68(6):1165-1181. doi: 10.1002/glia.23768. Epub 2019 Dec 20. PMID: 31859421; PMCID: PMC7269115.
From the Franco group:

Tsakadze N, Catania J, Hoffmann M, Benes-Lima L, Estevez AG, Franco MC, Rossi F.

Case Report: Length-dependent Small Fiber Polyneuropathy Caused by Coxsackie and Influenza Virus Co-Infection.

J Neurol Exp Neuroscience 2019. 5(2): 103-105.
From the Barbar group:

Jespersen NE, Leyrat C, Gérard FC, Bourhis JM, Blondel D, Jamin M, Barbar E.

The LC8-RavP ensemble Structure Evinces A Role for LC8 in Regulating Lyssavirus Polymerase Functionality.

J Mol Biol. 2019 Dec 6;431(24):4959-4977. doi: 10.1016/j.jmb.2019.10.011. Epub 2019 Oct 18. PMID: 31634467; PMCID: PMC7060403.
From the Cooley group:

Kitts G, Giglio KM, Zamorano-Sánchez D, Park JH, Townsley L, Cooley RB, Wucher BR, Klose KE, Nadell CD, Yildiz FH, Sondermann H.

A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae.

mBio. 2019 Dec 3;10(6):e02822-19. doi: 10.1128/mBio.02822-19. PMID: 31796544
From the Johnson group:

Golbek TW, Padmanarayana M, Roeters SJ, Weidner T, Johnson CP, Baio JE.

Otoferlin C2F Domain-Induced Changes in Membrane Structure Observed by Sum Frequency Generation.

Biophys J. 2019 Nov 19;117(10):1820-1830. doi: 10.1016/j.bpj.2019.09.010. Epub 2019 Sep 17. PMID: 31587832; PMCID: PMC7019022
From the Nyarko group:

Kwok E, Rodriguez DJ, Kremerskothen J, Nyarko A.

Intrinsic disorder and amino acid specificity modulate binding of the WW2 domain in kidney and brain protein (KIBRA) to synaptopodin.

J Biol Chem. 2019 Nov 15;294(46):17383-17394. doi: 10.1074/jbc.RA119.009589. Epub 2019 Oct 9. PMID: 31597702; PMCID: PMC6873182.
From the Merrill group:

Shearn CT, Fennimore B, Orlicky DJ, Gao YR, Saba LM, Battista KD, Aivazidis S, Assiri M, Harris PS, Michel C, Merrill GF, Schmidt EE, Colgan SP, Petersen DR.

Cholestatic liver disease results increased production of reactive aldehydes and an atypical periportal hepatic antioxidant response.

Free Radic Biol Med. 2019 Nov 1;143:101-114. doi: 10.1016/j.freeradbiomed.2019.07.036. Epub 2019 Aug 1. PMID: 31377417; PMCID: PMC6848778.
From the Matthews group:

Mathews CK.

Deoxyribonucleotide salvage falls short in whole animals.

J Biol Chem. 2019 Nov 1;294(44):15898-15899. doi: 10.1074/jbc.H119.011335. PMID: 31676554; PMCID: PMC6827281.
From the Mehl group:

Tugaeva KV, Kalacheva DI, Cooley RB, Strelkov SV, Sluchanko NN.

Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

Sci Rep. 2019 Oct 18;9(1):15007. doi: 10.1038/s41598-019-50941-3. PMID: 31628352; PMCID: PMC6802120.
From the Mehl group:

Bednar RM, Golbek TW, Kean KM, Brown WJ, Jana S, Baio JE, Karplus PA, Mehl RA.

Immobilization of Proteins with Controlled Load and Orientation.

ACS Appl Mater Interfaces. 2019 Oct 9;11(40):36391-36398. doi: 10.1021/acsami.9b12746. Epub 2019 Sep 26. PMID: 31525993.
From the Hendrix group:

Bell J, Larson M, Kutzler M, Bionaz M, Löhr CV, Hendrix D.

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs.

PLoS Comput Biol. 2019 Oct 9;15(10):e1007309. doi: 10.1371/journal.pcbi.1007309. PMID: 31596843; PMCID: PMC6785219.
From the Barbar group:

Forsythe HM, Vetter CJ, Jara KA, Reardon PN, David LL, Barbar EJ, Lampi KJ.

Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract- Associated Deamidations

Biochemistry. 2019 Oct 8;58(40):4112-4124. doi: 10.1021/acs.biochem.9b00593. Epub 2019 Sep 26. PMID: 31490062.

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Archived Publications

Biochemistry and Biophysics

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A Review of Micronutrients and the Immune System-Working in Harmony to Reduce the Risk of Infection.

Direct Determination of Antibody Chain Pairing by Top-down and Middle-down Mass Spectrometry Using Electron Capture Dissociation and Ultraviolet Photodissociation.

Improvements in Metabolic Syndrome by Xanthohumol Derivatives Are Linked to Altered Gut Microbiota and Bile Acid Metabolism.

Schwann cells orchestrate peripheral nerve inflammation through the expression of CSF1, IL-34, and SCF in amyotrophic lateral sclerosis.

Case Report: Length-dependent Small Fiber Polyneuropathy Caused by Coxsackie and Influenza Virus Co-Infection.

The LC8-RavP ensemble Structure Evinces A Role for LC8 in Regulating Lyssavirus Polymerase Functionality.

A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae.

Otoferlin C2F Domain-Induced Changes in Membrane Structure Observed by Sum Frequency Generation.

Intrinsic disorder and amino acid specificity modulate binding of the WW2 domain in kidney and brain protein (KIBRA) to synaptopodin.

Cholestatic liver disease results increased production of reactive aldehydes and an atypical periportal hepatic antioxidant response.

Deoxyribonucleotide salvage falls short in whole animals.

Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

Immobilization of Proteins with Controlled Load and Orientation.

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs.

Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract- Associated Deamidations

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