Publications

From the Perez group:

Díaz-Valdivia NI, Díaz J, Contreras P, Campos A, Rojas-Celis V, Burgos-Ravanal RA, Lobos-González L, Torres VA, Perez VI, Frei B, Leyton L, Quest AFG.

The non-receptor tyrosine phosphatase type 14 blocks caveolin-1-enhanced cancer cell metastasis.

Oncogene. 2020 Apr;39(18):3693-3709. doi: 10.1038/s41388-020-1242-3. Epub 2020 Mar 9. PMID: 32152405; PMCID: PMC7190567.
From the Barbar & Cooley group:

Forsythe, H. M., Galvan, J. R., Yu, Z., Pinckney, S., Reardon, P., Cooley, R. B., Zhu, P., Rolland, A. D., Prell, J. S., & Barbar, E. (2021).

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Biophysical Journal Mar 29:S0006-3495(21)00253-8. doi: 10.1016/j.bpj.2021.03.023. Online ahead of print.
From the Freitag group:

Möller M, Habig M, Lorrain C, Feurtey A, Haueisen J, Fagundes W.C, Alizadeh A, Freitag M, and Stukenbrock E.H. (2021).

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

PLoS Genet. Mar 22;17(3):e1009448. Doi: 10.1371/journal.pgen.1009448. Online ahead of print.
From the Hendrix group:

Eriksen R.L, Padgitt-Cobb L.K, Townsend M.S, and Henning J.A. (2021)

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Sci Rep Mar 4;11(1):5138. Doi: 10.1038/s41598-021-84691-y.
From the Karplus group:

Peskin A.V, Meotti F.C, Kean K.M, Göbl C, Peixoto A.S, Pace P.E, Horne C.R, Heath S.G, Crowther J.M, Dobson R.C, Karplus P.A, and Winterbourn C.C. (2021).

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

J Biol Chem. Mar 2;100494. doi: 10.1016/j.jbc.2021.100494. Online ahead of print.
From the Barbar group:

Loening N.M, and Barbar E. (2021)

Structural characterization of the self-association domain of swallow

Protein Sci Feb 27. Doi: 10.1002/pro.4055. Online ahead of print.
From the Nyarko group:

Baker K, Kwok E, Reardon P, Rodriguez DJ, Rolland AD, Wilson JW, Prell JS, Nyarko A.

Yorkie-Warts Complexes are an Ensemble of Interconverting Conformers Formed by Multivalent Interactions.

J Mol Biol. 2021 Feb 19;433(4):166776. doi: 10.1016/j.jmb.2020.166776. Epub 2020 Dec 28. PMID: 33383033.
From the Hendrix group:

Padgitt-Cobb L.K, Kingan S.B, Wells J, Elser J, Kronmiller B, Moore D, Concepcion G, Peluso P, Rank D, Jaiswal P, Henning J, and Hendrix D.A. (2021)

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Plant Genome Feb 18;e20072. https://doi.org/10.1002/tpg2.20072
From the Barbar group:

Eastwood E.L, Jara K.A, Bornelöv S, Munafò M, Frantzis V, Kneuss E, Barbar E.J, Czech B, and Hannon G.J. (2021).

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

Elife Feb 4;10e65557. Doi: 10.7554/eLife.65557
From the Johnson group:

Golbek TW, Otto SC, Roeters SJ, Weidner T, Johnson CP, Baio JE.

Direct Evidence That Mutations within Dysferlin's C2A Domain Inhibit Lipid Clustering.

J Phys Chem B. 2021 Jan 14;125(1):148-157. doi: 10.1021/acs.jpcb.0c07143. Epub 2020 Dec 23. PMID: 33355462.
From the Qiu group:

Xian Y, Xie, Y, Silva S.M, Karki C.B, Qiu W, and Li L. (2021)

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

Front Mol Biosci. Jan 11;7:627087. doi: 10.3389/fmolb.2020.627087. eCollection 2020.
From the Qiu group:

Xian Y, Xie Y, Silva SM, Karki CB, Qiu W, Li L.

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions.

Front Mol Biosci. 2021 Jan 11;7:627087. doi: 10.3389/fmolb.2020.627087. PMID: 33505991; PMCID: PMC7831659
From the Nyarko group:

Baker K, Kwok E, Reardon P, Rodriguez D.J, Rolland A.D, Wilson J.W, Prell J.S, and Nyarko A. (2020).

Yorkie-Warts complexes are an ensemble of interconverting conformers formed by multivalent interactions

J Mol Biol. Dec 28;166776. doi: 10.1016/j.jmb.2020.166776. Online ahead of print.
From the N/A group:

Moriarty NW, Liebschner D, Tronrud DE, Adams PD.

Arginine off-kilter: guanidinium is not as planar as restraints denote.

Acta Crystallogr D Struct Biol. 2020 Dec 1;76(Pt 12):1159-1166. doi: 10.1107/S2059798320013534. Epub 2020 Nov 24. PMID: 33263321; PMCID: PMC7709202.
From the Reardon group:

Schwichtenberg T, Bogdan D, Carignan CC, Reardon P, Rewerts J, Wanzek T, Field JA.

PFAS and Dissolved Organic Carbon Enrichment in Surface Water Foams on a Northern U.S. Freshwater Lake.

Environ Sci Technol. 2020 Nov 17;54(22):14455-14464. doi: 10.1021/acs.est.0c05697. Epub 2020 Nov 8. PMID: 33164508.

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Archived Publications

Biochemistry and Biophysics

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The non-receptor tyrosine phosphatase type 14 blocks caveolin-1-enhanced cancer cell metastasis.

Multivalent binding of the partially disordered SARS-CoV-2 nucleocapsid phosphoprotein dimer to RNA.

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.

Modifying the resolving cysteine affects the structure and hydrogen peroxide reactivity of peroxiredoxin 2.

Structural characterization of the self-association domain of swallow

Yorkie-Warts Complexes are an Ensemble of Interconverting Conformers Formed by Multivalent Interactions.

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila.

Direct Evidence That Mutations within Dysferlin's C2A Domain Inhibit Lipid Clustering.

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions

StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions.

Yorkie-Warts complexes are an ensemble of interconverting conformers formed by multivalent interactions

Arginine off-kilter: guanidinium is not as planar as restraints denote.

PFAS and Dissolved Organic Carbon Enrichment in Surface Water Foams on a Northern U.S. Freshwater Lake.

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