Publications

From the Nyarko group:

Kwok E, Rodriguez DJ, Kremerskothen J, Nyarko A.

Intrinsic disorder and amino acid specificity modulate binding of the WW2 domain in kidney and brain protein (KIBRA) to synaptopodin.

J Biol Chem. 2019 Nov 15;294(46):17383-17394. doi: 10.1074/jbc.RA119.009589. Epub 2019 Oct 9. PMID: 31597702; PMCID: PMC6873182.
From the Merrill group:

Shearn CT, Fennimore B, Orlicky DJ, Gao YR, Saba LM, Battista KD, Aivazidis S, Assiri M, Harris PS, Michel C, Merrill GF, Schmidt EE, Colgan SP, Petersen DR.

Cholestatic liver disease results increased production of reactive aldehydes and an atypical periportal hepatic antioxidant response.

Free Radic Biol Med. 2019 Nov 1;143:101-114. doi: 10.1016/j.freeradbiomed.2019.07.036. Epub 2019 Aug 1. PMID: 31377417; PMCID: PMC6848778.
From the Matthews group:

Mathews CK.

Deoxyribonucleotide salvage falls short in whole animals.

J Biol Chem. 2019 Nov 1;294(44):15898-15899. doi: 10.1074/jbc.H119.011335. PMID: 31676554; PMCID: PMC6827281.
From the Mehl group:

Tugaeva KV, Kalacheva DI, Cooley RB, Strelkov SV, Sluchanko NN.

Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

Sci Rep. 2019 Oct 18;9(1):15007. doi: 10.1038/s41598-019-50941-3. PMID: 31628352; PMCID: PMC6802120.
From the Mehl group:

Bednar RM, Golbek TW, Kean KM, Brown WJ, Jana S, Baio JE, Karplus PA, Mehl RA.

Immobilization of Proteins with Controlled Load and Orientation.

ACS Appl Mater Interfaces. 2019 Oct 9;11(40):36391-36398. doi: 10.1021/acsami.9b12746. Epub 2019 Sep 26. PMID: 31525993.
From the Hendrix group:

Bell J, Larson M, Kutzler M, Bionaz M, Löhr CV, Hendrix D.

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs.

PLoS Comput Biol. 2019 Oct 9;15(10):e1007309. doi: 10.1371/journal.pcbi.1007309. PMID: 31596843; PMCID: PMC6785219.
From the Barbar group:

Forsythe HM, Vetter CJ, Jara KA, Reardon PN, David LL, Barbar EJ, Lampi KJ.

Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract- Associated Deamidations

Biochemistry. 2019 Oct 8;58(40):4112-4124. doi: 10.1021/acs.biochem.9b00593. Epub 2019 Sep 26. PMID: 31490062.
From the Freitag group:

Bosnjak N, Smith KM, Asaria I, Lahola-Chomiak A, Kishore N, Todd AT, Freitag M, Nargang, FE

Involvement of a G Protein Regulatory Circuit in Alternative Oxidase Production in Neurospora crassa.

G3 (Bethesda) 2019. 9: 3453-3465. pii: g3.400522.2019. doi: 10.1534/g3.119.400522. PMID: 31444295
From the Johnson group:

Manchanda A, Chatterjee P, Bonventre JA, Haggard DE, Kindt KS, Tanguay RL, Johnson CP.

Otoferlin Depletion Results in Abnormal Synaptic Ribbons and Altered Intracellular Calcium Levels in Zebrafish.

Sci Rep. 2019 Oct 3;9(1):14273. doi: 10.1038/s41598-019-50710-2. PMID: 31582816; PMCID: PMC6776657.
From the Gombart group:

Chen S, Ge L, Wang H, Cheng Y, Gorantla S, Poluektova LY, Gombart AF, Xie J.

Eluted 25-hydroxyvitamin D3 from radially aligned nanofiber scaffolds enhances cathelicidin production while reducing inflammatory response in human immune system-engrafted mice.

Acta Biomater. 2019 Oct 1;97:187-199. doi: 10.1016/j.actbio.2019.08.005. Epub 2019 Aug 3. PMID: 31386930; PMCID: PMC6801031.
From the Hendrix group:

Sall K, Dekkers BJW, Nonogaki M, Katsuragawa Y, Koyari R, Hendrix D, Willems LAJ, Bentsink L, Nonogaki H.

DELAY OF GERMINATION 1-LIKE 4 acts as an inducer of seed reserve accumulation.

Plant J. 2019 Oct;100(1):7-19. doi: 10.1111/tpj.14485. Epub 2019 Sep 9. PMID: 31359518.
From the Hendrix group:

Ritter N, Ali T, Kopitchinski N, Schuster P, Beisaw A, Hendrix DA, Schulz MH, Müller-McNicoll M, Dimmeler S, Grote P.

The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development.

Dev Cell. 2019 Sep 9;50(5):644-657.e8. doi: 10.1016/j.devcel.2019.07.013. Epub 2019 Aug 15. PMID: 31422919.
From the Mehl group:

Randall LM, Dalla Rizza J, Parsonage D, Santos J, Mehl RA, Lowther WT, Poole LB, Denicola A.

Unraveling the effects of peroxiredoxin 2 nitration; role of C-terminal tyrosine 193.

Free Radic Biol Med. 2019 Sep;141:492-501. doi: 10.1016/j.freeradbiomed.2019.07.016. Epub 2019 Jul 16. PMID: 31323313; PMCID: PMC6749834.
From the Beckman group:

Kovacs M, Trias E, Varela V, Ibarburu S, Beckman JS, Moura IC, Hermine O, King PH, Si Y, Kwon Y, Barbeito L.

CD34 Identifies a Subset of Proliferating Microglial Cells Associated with Degenerating Motor Neurons in ALS.

Int J Mol Sci. 2019 Aug 9;20(16):3880. doi: 10.3390/ijms20163880. PMID: 31395804; PMCID: PMC6720880.
From the Mehl group:

Van Fossen EM, Bednar RM, Mehl RA.

Engineering Spatial Orthogonality into Protein Translation.

Biochemistry. 2019 Aug 6;58(31):3325-3327. doi: 10.1021/acs.biochem.9b00569. Epub 2019 Jul 25. PMID: 31343161.

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Intrinsic disorder and amino acid specificity modulate binding of the WW2 domain in kidney and brain protein (KIBRA) to synaptopodin.

Cholestatic liver disease results increased production of reactive aldehydes and an atypical periportal hepatic antioxidant response.

Deoxyribonucleotide salvage falls short in whole animals.

Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

Immobilization of Proteins with Controlled Load and Orientation.

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs.

Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract- Associated Deamidations

Involvement of a G Protein Regulatory Circuit in Alternative Oxidase Production in Neurospora crassa.

Otoferlin Depletion Results in Abnormal Synaptic Ribbons and Altered Intracellular Calcium Levels in Zebrafish.

Eluted 25-hydroxyvitamin D3 from radially aligned nanofiber scaffolds enhances cathelicidin production while reducing inflammatory response in human immune system-engrafted mice.

DELAY OF GERMINATION 1-LIKE 4 acts as an inducer of seed reserve accumulation.

The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development.

Unraveling the effects of peroxiredoxin 2 nitration; role of C-terminal tyrosine 193.

CD34 Identifies a Subset of Proliferating Microglial Cells Associated with Degenerating Motor Neurons in ALS.

Engineering Spatial Orthogonality into Protein Translation.

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