Publications

From the Mehl group:

Jang H.S, Gu X, Cooley R.B, Porter J.J, Henson R.L, Willi T, DiDonato J.A, Hazen S.L, and Mehl R.A. (2020).

Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.

ACS Chemical Biology Feb 10. doi: 10.1021/acschembio.9b01026. [Epub ahead of print]
From the Mehl group:

Beyer J, Hosseinzadeh P, Gottfried-Lee I, Van Fossen E.M, Zhu P, Bednar R.M, Karplus P.A, Mehl R.A, and Cooley R.B. (2020).

Overcoming Near-Cognate Suppression in a Release Factor 1-deficient Host With an Improved Nitro-Tyrosine tRNA Synthetase.

J Mol Biol. Jun 19;S0022-2836(20)30410-1. doi: 10.1016/j.jmb.2020.06.014. Online ahead of print.
From the n/a group:

Moriarty N.W, Liebschner D, Tronrud D.E, and Adams P.D. (2020).

Arginine off-kilter: guanidinium is not as planar as restraints denote

Acta Crystallogr D Struct Biol. Dec 1;76(Pt 12): 1159-1166. doi: 10.1107/S2059798320013534. Epub 2020 Nov 24.
From the Johnson group:

Bonventre JA, Holman C, Manchanda A, Codding SJ, Chau T, Huegel J, Barton C, Tanguay R, Johnson CP. (2019)

Fer1l6 is essential for the development of vertebrate muscle tissue in zebrafish.

Mol Biol Cell. Feb 1;30(3):293-301. doi: 10.1091/mbc.E18-06-0401.
From the Johnson group:

Manchanda A, Chatterjee P, Bonventre JA, Haggard DE, Kindt KS, Tanguay RL, Johnson CP. (2019)

Otoferlin Depletion Results in Abnormal Synaptic Ribbons and Altered Intracellular Calcium Levels in Zebrafish.

Sci Rep. Oct 3;9(1):14273. doi: 10.1038/s41598-019-50710-2.
From the Beckman group:

Williams J.P, Morrison L.J, Brown J.M, Beckman J.S, Voinov V.G, and Lermyte F. (2020)

Top-Down Characterization of Denatured Proteins and Native Protein Complexes Using Electron Capture Dissociation Implemented within a Modified Ion Mobility-Mass Spectrometer.

Anal Chem Feb 11. doi: 10.1021/acs.analchem.9b04763. [Epub ahead of print]
From the Gombart group:

Paraiso I.L, Revel J.S, Choi J, Miranda C.L, Lak P, Kioussi C, Bobe G, Gombart A.F, Raber J, Maier C.S, and Stevens J.F. (2020)

Targeting the Liver-Brain Axis with Hop-Derived Flavonoids Improves Lipid Metabolism and Cognitive Performance in Mice.

Mol Nutr Food Res. Jul 6;e2000341. doi: 10.1002/mnfr.202000341. Online ahead of print.
From the Johnson group:

Golbek T.W, Otto S.C, Roeters S.J, Weidner T, Johnson C.P, and Baio J.E. (2020).

Direct Evidence That Mutations within Dysferlin’s C2A Domain Inhibit Lipid Clustering

J Phys Chem B. Dec 23. doi: 10.1021/acs.jpcb.0c07143. Online ahead of print.
From the Freitag group:

Adpressa DA, Connolly LR, Konkel ZM, Neuhaus GF, Chang XL, Pierce BR, Smith KM, Freitag M, Loesgen S. (2019)

A metabolomics-guided approach to discover Fusarium graminearum metabolites after removal of a repressive histone modification.

Fungal Genet Biol. Jul 22;132:103256. doi: 10.1016/j.fgb.2019.103256. [Epub ahead of print]
From the Johnson group:

Golbek TW, Padmanarayana M, Roeters SJ, Weidner T, Johnson CP, Baio JE. (2019)

Otoferlin C2F Domain-Induced Changes in Membrane Structure Observed by Sum Frequency Generation.

Biophys J. Sep 17. pii: S0006-3495(19)30784-2. doi: 10.1016/j.bpj.2019.09.010. [Epub ahead of print]
From the Hendrix group:

Kashyap A, Rhodes A, Kronmiller B, Berger J, Champagne A, Davis E.W, Finnegan M.V, Geniza M, Hendrix D.A, Löhr C.V, Petro V.M, Sharpton T.J, Wells J, Epps C.W, Jaiswal P, Tyler B.M, and Ramsey S.A. (2020)

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.

BMC Genomics Feb 12;21(1):153. doi: 10.1186/s12864-019-6432-4.
From the Cooley group:

Tugaeva K.V, Remeeva A, Gushchin I, Cooley R.B, and Sluchanko N.N. (2020)

Design, expression, purification and crystallization of human 14-3-3ζ protein chimera with phosphopeptide from proapoptotic protein BAD.

Protein Expr Purif. Jul 16;105707. doi: 10.1016/j.pep.2020.105707. Online ahead of print.
From the Mehl group:

Randall LM, Dalla Rizza J, Parsonage D, Santos J, Mehl RA, Lowther WT, Poole LB, Denicola A. (2019)

Unraveling the effects of peroxiredoxin 2 nitration; role of C-terminal tyrosine 193.

Free Radic Biol Med. Jul 16;141:492-501. doi: 10.1016/j.freeradbiomed.2019.07.016. [Epub ahead of print]
From the Hendrix group:

Bell J, Larson M, Kutzler M, Bionaz M, Löhr CV, Hendrix D. (2019)

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs.

PLoS Comput Biol. Oct 9;15(10):e1007309. doi: 10.1371/journal.pcbi.1007309. eCollection 2019 Oct.
From the Merrill group:

Breysse D.H, Boone R.M, Long C.M, Merrill M.E, Schaupp C.M, White C.C, Kavanagh T.J, Schmidt E.E, and Merrill G.F. (2020)

Carbonyl Reductase 1 Plays a Significant Role in Converting Doxorubicin to Cardiotoxic Doxorubicinol in Mouse Liver, but the Majority of the Doxorubicinol-Forming Activity Remains Unidentified.

Drug Metab Dispos Mar;48(3):187-197. doi: 10.1124/dmd.119.089326. Epub 2020 Jan 18.

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Archived Publications

Biochemistry and Biophysics

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Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.

Overcoming Near-Cognate Suppression in a Release Factor 1-deficient Host With an Improved Nitro-Tyrosine tRNA Synthetase.

Arginine off-kilter: guanidinium is not as planar as restraints denote

Fer1l6 is essential for the development of vertebrate muscle tissue in zebrafish.

Otoferlin Depletion Results in Abnormal Synaptic Ribbons and Altered Intracellular Calcium Levels in Zebrafish.

Top-Down Characterization of Denatured Proteins and Native Protein Complexes Using Electron Capture Dissociation Implemented within a Modified Ion Mobility-Mass Spectrometer.

Targeting the Liver-Brain Axis with Hop-Derived Flavonoids Improves Lipid Metabolism and Cognitive Performance in Mice.

Direct Evidence That Mutations within Dysferlin’s C2A Domain Inhibit Lipid Clustering

A metabolomics-guided approach to discover Fusarium graminearum metabolites after removal of a repressive histone modification.

Otoferlin C2F Domain-Induced Changes in Membrane Structure Observed by Sum Frequency Generation.

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.

Design, expression, purification and crystallization of human 14-3-3ζ protein chimera with phosphopeptide from proapoptotic protein BAD.

Unraveling the effects of peroxiredoxin 2 nitration; role of C-terminal tyrosine 193.

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs.

Carbonyl Reductase 1 Plays a Significant Role in Converting Doxorubicin to Cardiotoxic Doxorubicinol in Mouse Liver, but the Majority of the Doxorubicinol-Forming Activity Remains Unidentified.

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