Publications

From the Cooley group:

Tugaeva KV, Kalacheva DI, Cooley RB, Strelkov SV, Sluchanko NN.

. Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

Sci Rep. 2019 Oct 18;9(1):15007. doi: 10.1038/s41598-019-50941-3. PMID: 31628352; PMCID: PMC6802120.
From the Barbar group:

Jespersen NE, Leyrat C, Gérard FC, Bourhis JM, Blondel D, Jamin M, Barbar E. (2019)

The LC8-RavP ensemble structure evinces a role for LC8 in regulating Lyssavirus polymerase functionality.

J Mol Biol. Oct 18. pii: S0022-2836(19)30607-2. doi: 10.1016/j.jmb.2019.10.011. [Epub ahead of print]
From the Barbar group:

Jespersen N, Barbar E.J. (2020).

Emerging Features of Linear Motif-Binding Hub Proteins.

Cell Feb 20. https://doi.org/10.1016/j.tibs.2020.01.004
From the Mehl group:

Oscar B.G, Zhu L, Wolfendeen H, Rozanov N.D, Chang A, Stout K.T, Sandwisch J.W, Porter J.J, Mehl R.A, and Fang C. (2020).

Dissecting Optical Response and Molecular Structure of Fluorescent Proteins With Non-canonical Chromophores.

Front Mol Biosci. Jul 7;7:131. doi: 10.3389/fmolb.2020.00131. eCollection 2020
From the Hendrix group:

Hill ST, Kuintzle R, Teegarden A, Merrill E 3rd, Danaee P, Hendrix DA. (2018)

A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential.

Nucleic Acids Res. Jul 9. doi: 10.1093/nar/gky567. [Epub ahead of print]
From the Mehl group:

Van Fossen EM, Bednar RM, Mehl RA. (2019)

Engineering Spatial Orthogonality into Protein Translation.

Biochemistry. Jul 25. doi: 10.1021/acs.biochem.9b00569. [Epub ahead of print]
From the Mathews group:

Mathews CK. (2019)

Deoxyribonucleotide salvage falls short in whole animals.

J Biol Chem. Nov 1;294(44):15898-15899. doi: 10.1074/jbc.H119.011335.
From the Estevez, Franco and Beckman group:

Strayer, A, Dennys-Rivers, C, Ricart, K, Narae, B, Beckman, J, Franco MC, Estevez, AG. (2019).

Ligand-independent activation of the P2X7 receptor by Hsp90 inhibition stimulates motor neuron apoptosis.

Experimental Biology and Medicine. 244(11):901-914.
From the Barbar and Qiu group:

Tseng K, Mickolajczyk K.J, Feng G, Feng Q, Kwok E.S, Howe J, Barbar E.J, Dawson S.C, Hancock W.O, and Qiu W. (2020).

The Tail of Kinesin-14a in Giardia Is a Dual Regulator of Motility.

Curr Biol. Jul 29;S0960-9822(20)30942-9. doi: 10.1016/j.cub.2020.06.090. Online ahead of print.
From the Hendrix group:

Danaee P, Rouches M, Wiley M, Deng D, Huang L, Hendrix D. (2018)

bpRNA: large-scale automated annotation and analysis of RNA secondary structure.

Nucleic Acids Res. Jun 20;46(11):5381-5394. doi: 10.1093/nar/gky285.
From the Franco group:

Pestoni JC, Klingeman Plati S, Valdivia Camacho OD, Fuse MA, Onatunde M, Sparrow NA, Karajannis MA, Fernández-Valle C, Franco MC. (2019)

Peroxynitrite supports a metabolic reprogramming in merlin-deficient Schwann cells and promotes cell survival.

J Biol Chem. Jul 26;294(30):11354-11368. doi: 10.1074/jbc.RA118.007152. Epub 2019 Jun 6.
From the Gombart group:

Zhang Y, Bobe G, Revel JS, Rodrigues R, Sharpton T.J, Fantacone M.L, Miranda C.L, Lowry M.B, Blakemore P.R, Morgun A, Shulzhenko N, Maier C.S, Stevens J.F, and Gombart A.F. (2019)

Improvements in Metabolic Syndrome by Xanthohumol Derivatives are Linked to Altered Gut Microbiota and Bile Acid Metabolism.

Mol Nutr Food Res. Nov 22: e1900789. doi: 10.1002/mnfr.201900789. [Epub ahead of print]
From the Nyarko group:

Kwok E, Rodriguez D.J, Kremerskothen J, and Nyarko A. (2019).

Intrinsic Disorder and Amino Acid Specificity Modulate Binding of the WW2 Domain in Kidney and Brain Protein (KIBRA) to Synaptopodin.

J Biol Chem. Nov 15;294(46):17383-17394. doi: 10.1074/jbc.RA119.009589. Epub 2019 Oct 9.
From the Gombart group:

Calder P.C, Carr A.C, Gombart A.F, and Eggersdorfer M. (2020).

Reply to "Comment on: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections. Nutrients 2020, 12, 1181".

Nutrients. Aug 3;12(8):E2326. doi: 10.3390/nu12082326.
From the Freitag group:

Thieme KG, Gerke J, Sasse C, Valerius O, Thieme S, Karimi R, Heinrich AK, Finkernagel F, Smith K, Bode HB, Freitag M, Ram AFJ, Braus GH. (2018)

Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism.

PLoS Genet. Jul 25;14(7):e1007511. doi: 10.1371/journal.pgen.1007511. [Epub ahead of print]

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Archived Publications

Biochemistry and Biophysics

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. Concatenation of 14-3-3 with partner phosphoproteins as a tool to study their interaction.

The LC8-RavP ensemble structure evinces a role for LC8 in regulating Lyssavirus polymerase functionality.

Emerging Features of Linear Motif-Binding Hub Proteins.

Dissecting Optical Response and Molecular Structure of Fluorescent Proteins With Non-canonical Chromophores.

A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential.

Engineering Spatial Orthogonality into Protein Translation.

Deoxyribonucleotide salvage falls short in whole animals.

Ligand-independent activation of the P2X7 receptor by Hsp90 inhibition stimulates motor neuron apoptosis.

The Tail of Kinesin-14a in Giardia Is a Dual Regulator of Motility.

bpRNA: large-scale automated annotation and analysis of RNA secondary structure.

Peroxynitrite supports a metabolic reprogramming in merlin-deficient Schwann cells and promotes cell survival.

Improvements in Metabolic Syndrome by Xanthohumol Derivatives are Linked to Altered Gut Microbiota and Bile Acid Metabolism.

Intrinsic Disorder and Amino Acid Specificity Modulate Binding of the WW2 Domain in Kidney and Brain Protein (KIBRA) to Synaptopodin.

Reply to "Comment on: Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections. Nutrients 2020, 12, 1181".

Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism.

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